HL_9HA6_043

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

9HA6|1|A|A|1808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_043 not in the Motif Atlas

Homologous match to HL_5J7L_179

Geometric discrepancy: 0.1843

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

9HA6|1|A|C|1806
9HA6|1|A|G|1807
9HA6|1|A|A|1808
9HA6|1|A|A|1809
9HA6|1|A|A|1810
9HA6|1|A|G|1811

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain X

Large ribosomal subunit protein bL28