HL_9HA6_046

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

9HA6|1|A|U|1951, 9HA6|1|A|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_046 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.2132

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9HA6|1|A|G|1949
9HA6|1|A|G|1950
9HA6|1|A|U|1951
9HA6|1|A|A|1952
9HA6|1|A|A|1953
9HA6|1|A|G|1954
9HA6|1|A|U|1955
9HA6|1|A|U|1956
9HA6|1|A|C|1957

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL14