HL_9HA6_049

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

9HA6|1|A|A|2211, 9HA6|1|A|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_049 not in the Motif Atlas

Homologous match to HL_4WF9_048

Geometric discrepancy: 0.4564

The information below is about HL_4WF9_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9HA6|1|A|G|2209
9HA6|1|A|U|2210
9HA6|1|A|A|2211
9HA6|1|A|A|2212
9HA6|1|A|U|2213
9HA6|1|A|C|2214
9HA6|1|A|C|2215

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2