HL_9HA6_050

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9HA6|1|A|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_050 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.2451

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

9HA6|1|A|C|2248
9HA6|1|A|U|2249
9HA6|1|A|G|2250
9HA6|1|A|G|2251
9HA6|1|A|G|2252
9HA6|1|A|G|2253
9HA6|1|A|C|2254
9HA6|1|A|G|2255
9HA6|1|A|G|2256

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

Large ribosomal subunit protein bL27