HL_9HA6_056

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

9HA6|1|A|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_056 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.1485

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9HA6|1|A|U|2404
9HA6|1|A|G|2405
9HA6|1|A|A|2406
9HA6|1|A|A|2407
9HA6|1|A|U|2408
9HA6|1|A|G|2409
9HA6|1|A|G|2410
9HA6|1|A|A|2411
9HA6|1|A|A|2412
9HA6|1|A|G|2413

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15