HL_9HA6_057

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

9HA6|1|A|U|2473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_057 not in the Motif Atlas

Homologous match to HL_9DFE_058

Geometric discrepancy: 0.2662

The information below is about HL_9DFE_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9HA6|1|A|A|2471
9HA6|1|A|G|2472
9HA6|1|A|U|2473
9HA6|1|A|U|2474
9HA6|1|A|C|2475
9HA6|1|A|A|2476
9HA6|1|A|U|2477
9HA6|1|A|A|2478
9HA6|1|A|U|2479

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36A

Chain G

Large ribosomal subunit protein uL6

Chain M

50S ribosomal protein L16