HL_9HA6_063

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9HA6|1|A|G|2751, 9HA6|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_063 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1217

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9HA6|1|A|C|2745
9HA6|1|A|U|2746
9HA6|1|A|G|2747
9HA6|1|A|A|2748
9HA6|1|A|A|2749
9HA6|1|A|A|2750
9HA6|1|A|G|2751
9HA6|1|A|C|2752
9HA6|1|A|A|2753
9HA6|1|A|U|2754
9HA6|1|A|C|2755
9HA6|1|A|U|2756
9HA6|1|A|A|2757
9HA6|1|A|A|2758
9HA6|1|A|G|2759

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36A

Chain G

Large ribosomal subunit protein uL6

Chain J

Large ribosomal subunit protein uL13