HL_9HAL_011

3D structure

PDB id

9HAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit d126_(L29)-/(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.49 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9HAL|1|A|G|329, 9HAL|1|A|A|330, 9HAL|1|A|C|331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HAL_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1715

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

9HAL|1|A|G|327
9HAL|1|A|U|328
9HAL|1|A|G|329
9HAL|1|A|A|330
9HAL|1|A|C|331
9HAL|1|A|A|332
9HAL|1|A|G|333
9HAL|1|A|C|334
9HAL|1|A|C|335

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain U

Large ribosomal subunit protein uL24