HL_9HAL_016

3D structure

PDB id

9HAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit d126_(L29)-/(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.49 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

9HAL|1|A|U|546, 9HAL|1|A|A|547, 9HAL|1|A|G|548, 9HAL|1|A|G|549

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HAL_016 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1833

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

9HAL|1|A|G|543
9HAL|1|A|C|544
9HAL|1|A|U|545
9HAL|1|A|U|546
9HAL|1|A|A|547
9HAL|1|A|G|548
9HAL|1|A|G|549
9HAL|1|A|C|550

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13

Chain R

Large ribosomal subunit protein bL21