HL_9HAL_029

3D structure

PDB id

9HAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit d126_(L29)-/(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.49 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9HAL|1|A|G|2751, 9HAL|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HAL_029 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.3265

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9HAL|1|A|C|2745
9HAL|1|A|U|2746
9HAL|1|A|G|2747
9HAL|1|A|A|2748
9HAL|1|A|A|2749
9HAL|1|A|A|2750
9HAL|1|A|G|2751
9HAL|1|A|C|2752
9HAL|1|A|A|2753
9HAL|1|A|U|2754
9HAL|1|A|C|2755
9HAL|1|A|U|2756
9HAL|1|A|A|2757
9HAL|1|A|A|2758
9HAL|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains