HL_9HLZ_006

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUAACAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HLZ_006 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.441

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9HLZ|1|AA|A|347
9HLZ|1|AA|U|348
9HLZ|1|AA|A|349
9HLZ|1|AA|A|350
9HLZ|1|AA|C|351
9HLZ|1|AA|A|352
9HLZ|1|AA|A|353
9HLZ|1|AA|A|354
9HLZ|1|AA|U|355

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain bb

Large ribosomal subunit protein mL59