HL_9HLZ_011

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUAAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HLZ_011 not in the Motif Atlas

Geometric match to HL_3HHN_010

Geometric discrepancy: 0.266

The information below is about HL_3HHN_010

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9HLZ|1|AA|U|539
9HLZ|1|AA|A|540
9HLZ|1|AA|U|541
9HLZ|1|AA|A|542
9HLZ|1|AA|A|543
9HLZ|1|AA|A|544
9HLZ|1|AA|A|545
9HLZ|1|AA|A|546

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 11

Large ribosomal subunit protein mL38

Chain RR

Large ribosomal subunit protein bL27m

Chain XX

Large ribosomal subunit protein bL33m

Chain ZZ

Large ribosomal subunit protein bL35m