HL_9HLZ_013

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUUGCAAUA

Length

10 nucleotides

Bulged bases

9HLZ|1|AA|U|638, 9HLZ|1|AA|A|642, 9HLZ|1|AA|U|643

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HLZ_013 not in the Motif Atlas

Homologous match to HL_7A0S_022

Geometric discrepancy: 0.2104

The information below is about HL_7A0S_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

9HLZ|1|AA|U|635
9HLZ|1|AA|G|636
9HLZ|1|AA|U|637
9HLZ|1|AA|U|638
9HLZ|1|AA|G|639
9HLZ|1|AA|C|640
9HLZ|1|AA|A|641
9HLZ|1|AA|A|642
9HLZ|1|AA|U|643
9HLZ|1|AA|A|644

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL3m

Chain OO

Large ribosomal subunit protein uL22m

Chain WW

Large ribosomal subunit protein bL32m

Chain YY

Large ribosomal subunit protein bL34m