HL_9HLZ_032

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGCAAAAGUAUCU

Length

13 nucleotides

Bulged bases

9HLZ|1|AA|A|2294, 9HLZ|1|AA|C|2301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HLZ_032 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.1829

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9HLZ|1|AA|A|2290
9HLZ|1|AA|G|2291
9HLZ|1|AA|C|2292
9HLZ|1|AA|A|2293
9HLZ|1|AA|A|2294
9HLZ|1|AA|A|2295
9HLZ|1|AA|A|2296
9HLZ|1|AA|G|2297
9HLZ|1|AA|U|2298
9HLZ|1|AA|A|2299
9HLZ|1|AA|U|2300
9HLZ|1|AA|C|2301
9HLZ|1|AA|U|2302

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain KK

Large ribosomal subunit protein uL16m

Chain RR

Large ribosomal subunit protein bL27m