HL_9HLZ_039

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUUGUAAA

Length

10 nucleotides

Bulged bases

9HLZ|1|AA|A|2673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HLZ_039 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.2214

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9HLZ|1|AA|U|2671
9HLZ|1|AA|G|2672
9HLZ|1|AA|A|2673
9HLZ|1|AA|U|2674
9HLZ|1|AA|U|2675
9HLZ|1|AA|G|2676
9HLZ|1|AA|U|2677
9HLZ|1|AA|A|2678
9HLZ|1|AA|A|2679
9HLZ|1|AA|A|2680

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain JJ

Large ribosomal subunit protein uL15m

Chain bb

Large ribosomal subunit protein mL59