HL_9HLZ_041

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGUAAAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HLZ_041 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.1477

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9HLZ|1|AA|U|2794
9HLZ|1|AA|U|2795
9HLZ|1|AA|G|2796
9HLZ|1|AA|U|2797
9HLZ|1|AA|A|2798
9HLZ|1|AA|A|2799
9HLZ|1|AA|A|2800
9HLZ|1|AA|A|2801
9HLZ|1|AA|G|2802

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 00

Large ribosomal subunit protein bL36m

Chain FF

Large ribosomal subunit protein uL6m