HL_9HLZ_050

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCUAAAUAC

Length

9 nucleotides

Bulged bases

9HLZ|1|r|U|158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HLZ_050 not in the Motif Atlas

Geometric match to HL_3CUL_003

Geometric discrepancy: 0.3632

The information below is about HL_3CUL_003

Detailed Annotation

T-loop related

Broad Annotation

T-loop related

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9HLZ|1|r|G|152
9HLZ|1|r|C|153
9HLZ|1|r|U|154
9HLZ|1|r|A|155
9HLZ|1|r|A|156
9HLZ|1|r|A|157
9HLZ|1|r|U|158
9HLZ|1|r|A|159
9HLZ|1|r|C|160

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain 5

Small ribosomal subunit protein mS44