HL_9HLZ_067

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUAAGUU

Length

8 nucleotides

Bulged bases

9HLZ|1|r|G|1141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HLZ_067 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.2165

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9HLZ|1|r|A|1136
9HLZ|1|r|U|1137
9HLZ|1|r|U|1138
9HLZ|1|r|A|1139
9HLZ|1|r|A|1140
9HLZ|1|r|G|1141
9HLZ|1|r|U|1142
9HLZ|1|r|U|1143

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9m

Chain Z

Small ribosomal subunit protein mS37