HL_9HM0_006

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUAACAAAU

Length

9 nucleotides

Bulged bases

9HM0|1|AA|U|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_006 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.4074

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9HM0|1|AA|A|347
9HM0|1|AA|U|348
9HM0|1|AA|A|349
9HM0|1|AA|A|350
9HM0|1|AA|C|351
9HM0|1|AA|A|352
9HM0|1|AA|A|353
9HM0|1|AA|A|354
9HM0|1|AA|U|355

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain bb

Large ribosomal subunit protein mL59