HL_9HM0_011

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUAAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_011 not in the Motif Atlas

Geometric match to HL_9DFE_020

Geometric discrepancy: 0.3721

The information below is about HL_9DFE_020

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9HM0|1|AA|U|539
9HM0|1|AA|A|540
9HM0|1|AA|U|541
9HM0|1|AA|A|542
9HM0|1|AA|A|543
9HM0|1|AA|A|544
9HM0|1|AA|A|545
9HM0|1|AA|A|546

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 11

Large ribosomal subunit protein mL38

Chain RR

Large ribosomal subunit protein bL27m

Chain XX

Large ribosomal subunit protein bL33m

Chain ZZ

Large ribosomal subunit protein bL35m