HL_9HM0_013
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGUUGCAAUA
- Length
- 10 nucleotides
- Bulged bases
- 9HM0|1|AA|U|638, 9HM0|1|AA|A|642, 9HM0|1|AA|U|643
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HM0_013 not in the Motif Atlas
- Homologous match to HL_7A0S_022
- Geometric discrepancy: 0.2027
- The information below is about HL_7A0S_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
9HM0|1|AA|U|635
9HM0|1|AA|G|636
9HM0|1|AA|U|637
9HM0|1|AA|U|638
9HM0|1|AA|G|639
9HM0|1|AA|C|640
9HM0|1|AA|A|641
9HM0|1|AA|A|642
9HM0|1|AA|U|643
9HM0|1|AA|A|644
Current chains
- Chain AA
- 21S mitochondrial rRNA
Nearby chains
- Chain CC
- Large ribosomal subunit protein uL3m
- Chain OO
- Large ribosomal subunit protein uL22m
- Chain WW
- Large ribosomal subunit protein bL32m
- Chain YY
- Large ribosomal subunit protein bL34m
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