HL_9HM0_014

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAAGA

Length

7 nucleotides

Bulged bases

9HM0|1|AA|A|672, 9HM0|1|AA|G|675

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_014 not in the Motif Atlas

Geometric match to HL_8B0X_054

Geometric discrepancy: 0.1067

The information below is about HL_8B0X_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

9HM0|1|AA|U|670
9HM0|1|AA|G|671
9HM0|1|AA|A|672
9HM0|1|AA|A|673
9HM0|1|AA|A|674
9HM0|1|AA|G|675
9HM0|1|AA|A|676

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2m