HL_9HM0_017

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_017 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.1899

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9HM0|1|AA|G|904
9HM0|1|AA|A|905
9HM0|1|AA|A|906
9HM0|1|AA|A|907
9HM0|1|AA|C|908
9HM0|1|AA|A|909
9HM0|1|AA|G|910
9HM0|1|AA|C|911

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain UU

Large ribosomal subunit protein uL30m

Chain cc

Large ribosomal subunit protein mL60