HL_9HM0_024

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

9HM0|1|AA|A|1586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_024 not in the Motif Atlas

Geometric match to HL_4WF9_039

Geometric discrepancy: 0.1688

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9HM0|1|AA|U|1581
9HM0|1|AA|A|1582
9HM0|1|AA|G|1583
9HM0|1|AA|A|1584
9HM0|1|AA|G|1585
9HM0|1|AA|A|1586
9HM0|1|AA|A|1587
9HM0|1|AA|U|1588
9HM0|1|AA|A|1589

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain TT

Large ribosomal subunit protein uL29m