HL_9HM0_026

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUACUAAAAA

Length

11 nucleotides

Bulged bases

9HM0|1|AA|A|1687, 9HM0|1|AA|C|1688, 9HM0|1|AA|U|1689, 9HM0|1|AA|A|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_026 not in the Motif Atlas

Geometric match to HL_8B0X_073

Geometric discrepancy: 0.0936

The information below is about HL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9HM0|1|AA|U|1684
9HM0|1|AA|U|1685
9HM0|1|AA|U|1686
9HM0|1|AA|A|1687
9HM0|1|AA|C|1688
9HM0|1|AA|U|1689
9HM0|1|AA|A|1690
9HM0|1|AA|A|1691
9HM0|1|AA|A|1692
9HM0|1|AA|A|1693
9HM0|1|AA|A|1694

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2m

Chain YY

Large ribosomal subunit protein bL34m