HL_9HM0_032

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGCAAAAGUAUCU

Length

13 nucleotides

Bulged bases

9HM0|1|AA|A|2294, 9HM0|1|AA|C|2301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_032 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.1959

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9HM0|1|AA|A|2290
9HM0|1|AA|G|2291
9HM0|1|AA|C|2292
9HM0|1|AA|A|2293
9HM0|1|AA|A|2294
9HM0|1|AA|A|2295
9HM0|1|AA|A|2296
9HM0|1|AA|G|2297
9HM0|1|AA|U|2298
9HM0|1|AA|A|2299
9HM0|1|AA|U|2300
9HM0|1|AA|C|2301
9HM0|1|AA|U|2302

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain KK

Large ribosomal subunit protein uL16m

Chain RR

Large ribosomal subunit protein bL27m