HL_9HM0_037

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAACGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_037 not in the Motif Atlas

Homologous match to HL_7A0S_056

Geometric discrepancy: 0.3305

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9HM0|1|AA|C|2622
9HM0|1|AA|A|2623
9HM0|1|AA|A|2624
9HM0|1|AA|A|2625
9HM0|1|AA|C|2626
9HM0|1|AA|G|2627
9HM0|1|AA|A|2628
9HM0|1|AA|G|2629

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain JJ

Large ribosomal subunit protein uL15m

Chain RR

Large ribosomal subunit protein bL27m

Chain ZZ

Large ribosomal subunit protein bL35m