HL_9HM0_039

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAUUGUAAA

Length

10 nucleotides

Bulged bases

9HM0|1|AA|A|2673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_039 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.2332

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9HM0|1|AA|U|2671
9HM0|1|AA|G|2672
9HM0|1|AA|A|2673
9HM0|1|AA|U|2674
9HM0|1|AA|U|2675
9HM0|1|AA|G|2676
9HM0|1|AA|U|2677
9HM0|1|AA|A|2678
9HM0|1|AA|A|2679
9HM0|1|AA|A|2680

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain JJ

Large ribosomal subunit protein uL15m

Chain bb

Large ribosomal subunit protein mL59