HL_9HM0_045

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAGUUUA

Length

8 nucleotides

Bulged bases

9HM0|1|AA|U|3020

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_045 not in the Motif Atlas

Geometric match to HL_3HHN_009

Geometric discrepancy: 0.2063

The information below is about HL_3HHN_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9HM0|1|AA|U|3019
9HM0|1|AA|U|3020
9HM0|1|AA|A|3021
9HM0|1|AA|G|3022
9HM0|1|AA|U|3023
9HM0|1|AA|U|3024
9HM0|1|AA|U|3025
9HM0|1|AA|A|3026

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain TT

Large ribosomal subunit protein uL29m

Chain dd

Large ribosomal subunit protein mL67