HL_9HM0_046

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGAAUACAUAUUAAA

Length

16 nucleotides

Bulged bases

9HM0|1|AA|A|3087, 9HM0|1|AA|A|3091, 9HM0|1|AA|U|3093

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_046 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.2278

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

9HM0|1|AA|U|3081
9HM0|1|AA|U|3082
9HM0|1|AA|G|3083
9HM0|1|AA|A|3084
9HM0|1|AA|A|3085
9HM0|1|AA|U|3086
9HM0|1|AA|A|3087
9HM0|1|AA|C|3088
9HM0|1|AA|A|3089
9HM0|1|AA|U|3090
9HM0|1|AA|A|3091
9HM0|1|AA|U|3092
9HM0|1|AA|U|3093
9HM0|1|AA|A|3094
9HM0|1|AA|A|3095
9HM0|1|AA|A|3096

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 00

Large ribosomal subunit protein bL36m

Chain FF

Large ribosomal subunit protein uL6m

Chain HH

Large ribosomal subunit protein uL13m