HL_9HM0_050

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCUAAAUAC

Length

9 nucleotides

Bulged bases

9HM0|1|r|U|158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_050 not in the Motif Atlas

Geometric match to HL_8B0X_011

Geometric discrepancy: 0.3909

The information below is about HL_8B0X_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9HM0|1|r|G|152
9HM0|1|r|C|153
9HM0|1|r|U|154
9HM0|1|r|A|155
9HM0|1|r|A|156
9HM0|1|r|A|157
9HM0|1|r|U|158
9HM0|1|r|A|159
9HM0|1|r|C|160

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain 5

Small ribosomal subunit protein mS27