HL_9HQV_004
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- CUUAAUUG
- Length
- 8 nucleotides
- Bulged bases
- 9HQV|1|SE|U|42
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HQV_004 not in the Motif Atlas
- Geometric match to HL_5J7L_024
- Geometric discrepancy: 0.1574
- The information below is about HL_5J7L_024
- Detailed Annotation
- T-loop related
- Broad Annotation
- T-loop
- Motif group
- HL_77436.5
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
9HQV|1|SE|C|37
9HQV|1|SE|U|38
9HQV|1|SE|U|39
9HQV|1|SE|A|40
9HQV|1|SE|A|41
9HQV|1|SE|U|42
9HQV|1|SE|U|43
9HQV|1|SE|G|44
Current chains
- Chain SE
- SSU-5
Nearby chains
- Chain Bl
- Putative 30S ribosomal protein S16
- Chain Bq
- Mitochondrial ribosomal protein, mS26
- Chain Bt
- mS34
- Chain By
- Homeodomain-like containing protein
- Chain SA
- SSU-1
- Chain SB
- SSU-2
- Chain Ya
- mS117
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