HL_9HQV_007
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- GAAUUAAAUC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HQV_007 not in the Motif Atlas
- Geometric match to HL_4LFB_015
- Geometric discrepancy: 0.139
- The information below is about HL_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9HQV|1|SI|G|5
9HQV|1|SI|A|6
9HQV|1|SI|A|7
9HQV|1|SI|U|8
9HQV|1|SI|U|9
9HQV|1|SI|A|10
9HQV|1|SI|A|11
9HQV|1|SI|A|12
9HQV|1|SI|U|13
9HQV|1|SI|C|14
Current chains
- Chain SI
- SSU-9
Nearby chains
- Chain Bg
- Putative ribosomal protein S11
- Chain Bo
- Ribosomal protein, bS21m
- Chain SJ
- SSU-10
- Chain Ul
- GLY-ARG-SER-LYS-VAL-LEU-ILE-ARG-ARG-LEU-LYS-GLU-ARG-ALA-LYS-LYS-GLU-ALA-GLU-LYS-LYS-ALA
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