HL_9HUS_012

3D structure

PDB id

9HUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 31, with P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9HUS|1|b|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HUS_012 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1195

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

9HUS|1|b|C|305
9HUS|1|b|U|306
9HUS|1|b|G|307
9HUS|1|b|G|308
9HUS|1|b|A|309
9HUS|1|b|A|310
9HUS|1|b|A|311
9HUS|1|b|G|312

Current chains

Chain b

23S rRNA

Nearby chains

Chain u

Large ribosomal subunit protein uL24