HL_9HUS_014

3D structure

PDB id

9HUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 31, with P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9HUS|1|b|G|329, 9HUS|1|b|A|330, 9HUS|1|b|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HUS_014 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.4062

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

16

Unit IDs

9HUS|1|b|G|327
9HUS|1|b|U|328
9HUS|1|b|G|329
9HUS|1|b|A|330
9HUS|1|b|C|331
9HUS|1|b|A|332
9HUS|1|b|G|333
9HUS|1|b|C|334
9HUS|1|b|C|335

Current chains

Chain b

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain u

Large ribosomal subunit protein uL24