HL_9HUS_043

3D structure

PDB id

9HUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 31, with P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9HUS|1|b|A|1614, 9HUS|1|b|A|1616, 9HUS|1|b|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HUS_043 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1714

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9HUS|1|b|C|1612
9HUS|1|b|G|1613
9HUS|1|b|A|1614
9HUS|1|b|C|1615
9HUS|1|b|A|1616
9HUS|1|b|C|1617
9HUS|1|b|A|1618
9HUS|1|b|G|1619

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL22

Chain z

Gelation factor