HL_9HUS_073

3D structure

PDB id

9HUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 31, with P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

9HUS|1|v|A|14, 9HUS|1|v|C|17, 9HUS|1|v|U|18, 9HUS|1|v|G|19, 9HUS|1|v|G|20, 9HUS|1|v|U|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HUS_073 not in the Motif Atlas

Homologous match to HL_7YSE_001

Geometric discrepancy: 0.1506

The information below is about HL_7YSE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HUS|1|v|C|13
9HUS|1|v|A|14
9HUS|1|v|G|15
9HUS|1|v|C|16
9HUS|1|v|C|17
9HUS|1|v|U|18
9HUS|1|v|G|19
9HUS|1|v|G|20
9HUS|1|v|U|21
9HUS|1|v|A|22
9HUS|1|v|G|23

Current chains

Chain v

P-site tRNA

Nearby chains

Chain b

Large subunit ribosomal RNA; LSU rRNA

Chain f

Large ribosomal subunit protein uL5