HL_9HY6_054

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

9HY6|1|b|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HY6_054 not in the Motif Atlas

Geometric match to HL_9DFE_046

Geometric discrepancy: 0.2079

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9HY6|1|b|G|1910
9HY6|1|b|U|1911
9HY6|1|b|A|1912
9HY6|1|b|A|1913
9HY6|1|b|C|1914
9HY6|1|b|U|1915
9HY6|1|b|A|1916
9HY6|1|b|U|1917
9HY6|1|b|A|1918
9HY6|1|b|A|1919
9HY6|1|b|C|1920

Current chains

Chain b

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA

Chain v

Transfer RNA; tRNA