HL_9I2D_099

3D structure

PDB id

9I2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 10 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

9I2D|1|S2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I2D|1|S2|G|1054
9I2D|1|S2|A|1055
9I2D|1|S2|U|1056
9I2D|1|S2|C|1057
9I2D|1|S2|A|1058
9I2D|1|S2|G|1059
9I2D|1|S2|A|1060
9I2D|1|S2|U|1061
9I2D|1|S2|A|1062
9I2D|1|S2|C|1063
9I2D|1|S2|C|1064

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CM

CMV-staller mRNA with 18aa ARF1-linker

Chain CP

Transfer RNA; tRNA

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SO

40S ribosomal protein S14

Chain Sa

40S ribosomal protein S26