HL_9I3L_014

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9I3L|1|b|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I3L_014 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1193

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9I3L|1|b|C|305
9I3L|1|b|U|306
9I3L|1|b|G|307
9I3L|1|b|G|308
9I3L|1|b|A|309
9I3L|1|b|A|310
9I3L|1|b|A|311
9I3L|1|b|G|312

Current chains

Chain b

23S rRNA

Nearby chains

Chain u

Large ribosomal subunit protein uL24