HL_9I3L_016
3D structure
- PDB id
- 9I3L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGACAGCC
- Length
- 9 nucleotides
- Bulged bases
- 9I3L|1|b|G|329, 9I3L|1|b|A|330, 9I3L|1|b|C|331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9I3L_016 not in the Motif Atlas
- Homologous match to HL_7A0S_012
- Geometric discrepancy: 0.3787
- The information below is about HL_7A0S_012
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.5
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 17
Unit IDs
9I3L|1|b|G|327
9I3L|1|b|U|328
9I3L|1|b|G|329
9I3L|1|b|A|330
9I3L|1|b|C|331
9I3L|1|b|A|332
9I3L|1|b|G|333
9I3L|1|b|C|334
9I3L|1|b|C|335
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain e
- Large ribosomal subunit protein uL4
- Chain u
- Large ribosomal subunit protein uL24
Coloring options: