HL_9I3L_057

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

9I3L|1|b|A|2272, 9I3L|1|b|C|2279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I3L_057 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.242

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9I3L|1|b|C|2268
9I3L|1|b|U|2269
9I3L|1|b|A|2270
9I3L|1|b|A|2271
9I3L|1|b|A|2272
9I3L|1|b|G|2273
9I3L|1|b|A|2274
9I3L|1|b|G|2275
9I3L|1|b|U|2276
9I3L|1|b|A|2277
9I3L|1|b|A|2278
9I3L|1|b|C|2279
9I3L|1|b|G|2280

Current chains

Chain b

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L16

Chain y

Large ribosomal subunit protein bL27