HL_9I3L_062

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

9I3L|1|b|A|2410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I3L_062 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.1902

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9I3L|1|b|U|2408
9I3L|1|b|G|2409
9I3L|1|b|A|2410
9I3L|1|b|A|2411
9I3L|1|b|U|2412
9I3L|1|b|G|2413
9I3L|1|b|G|2414
9I3L|1|b|A|2415
9I3L|1|b|A|2416
9I3L|1|b|G|2417

Current chains

Chain b

23S rRNA

Nearby chains

Chain l

Large ribosomal subunit protein uL15