HL_9I3L_069

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9I3L|1|b|G|2755, 9I3L|1|b|C|2759

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I3L_069 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.2437

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

9I3L|1|b|C|2749
9I3L|1|b|U|2750
9I3L|1|b|G|2751
9I3L|1|b|A|2752
9I3L|1|b|A|2753
9I3L|1|b|A|2754
9I3L|1|b|G|2755
9I3L|1|b|C|2756
9I3L|1|b|A|2757
9I3L|1|b|U|2758
9I3L|1|b|C|2759
9I3L|1|b|U|2760
9I3L|1|b|A|2761
9I3L|1|b|A|2762
9I3L|1|b|G|2763

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain g

Large ribosomal subunit protein uL6

Chain j

Large ribosomal subunit protein uL13