HL_9I5T_004

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9I5T|1|A|A|174, 9I5T|1|A|A|177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5T_004 not in the Motif Atlas

Geometric match to HL_8B0X_038

Geometric discrepancy: 0.0615

The information below is about HL_8B0X_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9I5T|1|A|G|172
9I5T|1|A|A|173
9I5T|1|A|A|174
9I5T|1|A|A|175
9I5T|1|A|C|176
9I5T|1|A|A|177
9I5T|1|A|U|178
9I5T|1|A|C|179

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL28

Chain O

Large ribosomal subunit protein uL15