HL_9I5T_009

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AUGAAAGCU

Length

9 nucleotides

Bulged bases

9I5T|1|A|G|347, 9I5T|1|A|A|348, 9I5T|1|A|A|349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5T_009 not in the Motif Atlas

Geometric match to HL_9E6Q_012

Geometric discrepancy: 0.1388

The information below is about HL_9E6Q_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

9I5T|1|A|A|345
9I5T|1|A|U|346
9I5T|1|A|G|347
9I5T|1|A|A|348
9I5T|1|A|A|349
9I5T|1|A|A|350
9I5T|1|A|G|351
9I5T|1|A|C|352
9I5T|1|A|U|353

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL4

Chain V

Large ribosomal subunit protein uL22

Chain X

Large ribosomal subunit protein uL24