HL_9I5T_028

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9I5T|1|A|U|1729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5T_028 not in the Motif Atlas

Geometric match to HL_8B0X_008

Geometric discrepancy: 0.0572

The information below is about HL_8B0X_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9I5T|1|A|C|1727
9I5T|1|A|U|1728
9I5T|1|A|U|1729
9I5T|1|A|C|1730
9I5T|1|A|G|1731
9I5T|1|A|G|1732

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2