HL_9I5T_035

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAAAGCGUAACG

Length

13 nucleotides

Bulged bases

9I5T|1|A|A|2269, 9I5T|1|A|C|2276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5T_035 not in the Motif Atlas

Geometric match to HL_8B0X_081

Geometric discrepancy: 0.0903

The information below is about HL_8B0X_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9I5T|1|A|C|2265
9I5T|1|A|A|2266
9I5T|1|A|A|2267
9I5T|1|A|A|2268
9I5T|1|A|A|2269
9I5T|1|A|G|2270
9I5T|1|A|C|2271
9I5T|1|A|G|2272
9I5T|1|A|U|2273
9I5T|1|A|A|2274
9I5T|1|A|A|2275
9I5T|1|A|C|2276
9I5T|1|A|G|2277

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

Large ribosomal subunit protein uL16

Chain Z

Large ribosomal subunit protein bL27