HL_9I5T_045
3D structure
- PDB id
- 9I5T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S subunit of P. gingivalis ribosome with Lefamulin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9I5T|1|A|G|2752, 9I5T|1|A|C|2756
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9I5T_045 not in the Motif Atlas
- Geometric match to HL_8B0X_093
- Geometric discrepancy: 0.1035
- The information below is about HL_8B0X_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53269.3
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 11
Unit IDs
9I5T|1|A|C|2746
9I5T|1|A|U|2747
9I5T|1|A|G|2748
9I5T|1|A|A|2749
9I5T|1|A|A|2750
9I5T|1|A|A|2751
9I5T|1|A|G|2752
9I5T|1|A|C|2753
9I5T|1|A|A|2754
9I5T|1|A|U|2755
9I5T|1|A|C|2756
9I5T|1|A|U|2757
9I5T|1|A|A|2758
9I5T|1|A|A|2759
9I5T|1|A|G|2760
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 13
- Large ribosomal subunit protein uL6
- Chain 15
- DUF4295 domain-containing protein
- Chain 8
- Large ribosomal subunit protein bL36
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