HL_9I5T_047

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5T_047 not in the Motif Atlas

Geometric match to HL_4LFB_028

Geometric discrepancy: 0.0941

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9I5T|1|A|G|2842
9I5T|1|A|G|2843
9I5T|1|A|U|2844
9I5T|1|A|A|2845
9I5T|1|A|A|2846
9I5T|1|A|C|2847

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

Large ribosomal subunit protein bL19